{ "_id": "6ac4cad1f511ae58c09a16bd", "Package": "HaploCatcher", "Title": "A Predictive Haplotyping Package", "Date": "2026-06-01", "Version": "2.0.1", "Authors@R": "person(\"Zachary\", \"Winn\", , \"zwinn@outlook.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1543-1527\"))", "Description": "Used for predicting a genotype's allelic state at a\nspecific locus/QTL/gene. This is accomplished by using both a\ngenotype matrix and a separate file which has categorizations\nabout loci/QTL/genes of interest for the individuals in the\ngenotypic matrix. A training population can be created from a\npanel of individuals who have been previously screened for\nspecific loci/QTL/genes, and this previous screening could be\nsummarized into a category. Using the categorization of\nindividuals which have been genotyped using a genome wide\nmarker platform, a model can be trained to predict what\ncategory (haplotype) an individual belongs in based on their\ngenetic sequence in the region associated with the\nlocus/QTL/gene. These trained models can then be used to\npredict the haplotype of a locus/QTL/gene for individuals which\nhave been genotyped with a genome wide platform yet not\ngenotyped for the specific locus/QTL/gene. This package is\nbased off work done by Winn et al 2021. For more specific\ninformation on this method, refer to\n.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "URL": "https://github.com/zjwinn/HaploCatcher", "BugReports": "https://github.com/zjwinn/HaploCatcher/issues", "LazyData": "true", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://zjwinn.r-universe.dev", "Date/Publication": "2026-06-08 21:14:48 UTC", "RemoteUrl": "https://github.com/zjwinn/haplocatcher", "RemoteRef": "HEAD", "RemoteSha": "be020adff0d5596313708daeec28afe706a37923", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-06 10:13:10 UTC", "User": "root" }, "Author": "Zachary Winn [aut, cre] (ORCID:\n)", "Maintainer": "Zachary Winn ", "_user": "zjwinn", "_type": "src", "_file": "HaploCatcher_2.0.1.tar.gz", "_fileid": "https://r2.ropensci.org/05aba86dd3abf6436d7f46b09434365215d760f693acca3042d4849af63d21bd", "_filesize": 1073795, "_sha256": "05aba86dd3abf6436d7f46b09434365215d760f693acca3042d4849af63d21bd", "_expires": "2027-01-14T10:17:51.000Z", "_created": "2026-10-06T10:13:10.000Z", "_published": "2026-10-06T10:17:53.254Z", "_jobs": [ { "job": 112218539542, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11405165106" }, { "job": 112218539476, "time": 176, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11404078960" }, { "job": 112218539510, "time": 236, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11404517789" }, { "job": 112218539436, "time": 219, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11403729796" }, { "job": 112216648358, "time": 306, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11403643446" }, { "job": 112218539493, "time": 133, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11405070024" }, { "job": 112218539469, "time": 171, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11404522738" }, { "job": 112218539588, "time": 119, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11403563700" }, { "job": 112218539541, "time": 157, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11404332931" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/zjwinn/actions/runs/37447733625", "_status": "success", "_upstream": "https://github.com/zjwinn/haplocatcher", "_commit": { "id": "be020adff0d5596313708daeec28afe706a37923", "author": "Zachary Winn ", "committer": "Zachary Winn ", "message": "Update for CRAN submission\n", "time": 1780953288 }, "_maintainer": { "name": "Zachary Winn", "email": "zwinn@outlook.com", "login": "zjwinn", "linkedin": "in/zwinn", "description": "Wheat Genetics Researcher. 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